> Last time I went through the install process, there were no such links
> on the 'create workspace' page.  These links where you can click
> to suggest ontology mappings seems like a new feature to me.  Was
> it always there?

The funcitonality has existed but the links were moved to that location by RG's
request (actually as of yesterday they're on a separate page linked in that same
locatoin, so they've moved a second time).

ERROR reading file: msg78
Possibly a access right configuration problem.
[Errno 13] Permission denied: '/extra/trackers/sgdi/db/files/msg/0/msg78'

function checkSetPhenodata() exists in R2pgsql.R in the SGDI package.  However
it isn't actually called by anything.

Ah, I know what's happening here.

All data sets have 4 required phenotypic variables (as they're really info about
the set but at the time we didn't know of a way to attach that sort of
meta-information to the whole set).  species, tissue.type, sample.type and
experiment.type.  

2 things:  
- This needs to be documented
- I thought there was code to verify that these existed before loading but I do
not see it now (before loading into the DB that is).

Also, not sure what "this" is in terms of being a new feature, and not sure what
"this" is in terms of 'this isn't available'.

I haven't loaded any ontology mapping stuff in the ovarian instance.
On the intro screen: http://gopher6:8080/sgdi_ova/workspaceSelectionForm I see a
list of datasets and if I click one I get:

Site Error

An error was encountered while publishing this resource.

Error Type: ProgrammingError
Error Value: ERROR: column "species" does not exist SELECT "species" FROM
eset0004_pheno_pdata;

It would be nice to have a friendly message saying this isn't available.  Better
yet, check for that at the start and don't provide the links at all.

Also, isn't this a new feature and shouldn't we not be introducing new bugs at
this point in the game?